Loss Of Diversity Research Articles

Pine needle gasification-based electricity production: Understanding the effect of supply chain.

Pine needles (pine tree leaves), found abundantly across continents such as North America, Asia, Europe, South America, Africa, and parts of the Southern Hemisphere, are a significant global concern due to their high susceptibility to catching fire, especially in dry and hot climates. The same issue persists in the Uttarakhand state of India, which boasts ample pine forests, yielding a substantial 1.67 × 109kg of pine needles annually. In the present study, the annual potential emissions from forest fires in Uttarakhand were estimated to be 58.37 × 109kg of CO2 equivalent. Therefore, the present research aims to unlock pine needles' potential via gasification for green electricity and biochar production, offering an alternative to coal-based plants while reducing forest fire frequencies. Nevertheless, obstacles hindering pine needle gasification include an unsteady supply chain, limited collection windows (100days), and plant expenses, including transportation and operational costs. The primary focus of the research is to design and assess the performance of a gasification-based supply chain for pine needles in the Almora District of Uttarakhand. Ten plant capacity scenarios were considered, ranging from 25 to 250kW. The study incorporated critical factors, encompassing diverse losses within the supply chain, selecting potential plant sites, minimizing transportation distance, and evaluating the supply chain's economic and environmental performance. The economic analysis revealed that the 250-kW plant scenario exhibited a minimum discounted payback period (DPP) of 3.93years, alongside an internal rate of return (IRR) of 19% and a net present value (NPV) of 653.32 million INR without government subsidies. With subsidies included, the DPP decreased to 1.30years, improving the IRR to 69% with an NPV of 916.17 million INR. The emission analysis indicated that gasification plant capacity scenarios could potentially reduce 44.63 × 106 to 46.16 × 106kg of CO2 equivalent emissions annually compared to grid electricity while meeting nearly 5.5% of the electricity demand of Almora district. The present study aligns with SDG-7 (Affordable and Clean Energy), SDG-13 (Climate Action), SDG-9 (Industry, Innovation, and Infrastructure), SDG-11 (Sustainable Cities and Communities), SDG-3 (Good Health and Well-being), and SDG-15 (Life on Land).

Reinforcements in the face of ongoing threats: a case study from a critically small carnivore population

AbstractReinforcements are a well‐established tool for alleviating small population pressures of inbreeding and genetic diversity loss. Some small populations also suffer from specific threats that pose a discrete selective pressure, like diseases. Uncertainty about reinforcing diseased populations exists, as doing so may increase disease prevalence and disrupt potential adaptive processes. However, without assisted gene flow, isolated populations are at high risk of extinction. Tasmanian devils (Sarcophilus harrisii) are a useful case study to test whether reinforcements can alleviate small‐population pressures where there is an ongoing disease pressure. We investigated demographic, genome‐wide and functional genetic diversity, and disease consequences of reinforcing a small population (<20 animals) that was severely impacted by devil facial tumour disease. Released animals from one source population successfully bred with incumbent individuals, tripling the population size, improving genome‐wide and functional diversity and introducing 26 new putatively functional alleles, with no common alleles lost and no increase in disease prevalence. Results suggest, in the case of Tasmanian devils, reinforcements can alleviate small‐population pressures without increasing disease prevalence. Because no common functional alleles were lost, it is likely that any adaptive processes in response to the disease may still occur in the reinforced population, perhaps even with greater efficiency due to reduced genetic drift (due to larger population size). Our study is presented as a comprehensive worked example of the IUCN's guidelines for monitoring reinforcements, to showcase the value of genetic monitoring in a richly monitored system and provide realistic approaches to test similar questions in other taxa.

Arctic phytoplankton microdiversity across the marginal ice zone: Subspecies vulnerability to sea-ice loss

Seasonal phytoplankton blooms are important Arctic phenomena, contributing to global primary production and biogeochemical cycling. The decline in sea-ice extent and thickness favors a longer open-water period with impacts on phytoplankton dynamics. Arctic net productivity is influenced by microalgae living associated with sea ice, with distinct species thought to be favored by ice-covered and ice-free waters. In this study, we investigated the phytoplankton community structure in Baffin Bay, a semi-enclosed sea where Arctic and North Atlantic water masses interact. We compared communities from the ice-free Atlantic-influenced eastern, the marginal ice zone, and the ice-covered Arctic-influenced western Baffin Bay. The community was characterized using 18S rRNA high-throughput amplicon sequencing and flow cytometry cell counting, and compared to environmental data collected during the Green Edge campaign. We sampled 16 stations grouped by sectors according to sea-ice cover. In the sectors associated with sea ice, phytoplankton formed a highly diverse community of smaller taxa, which contrasted with a low-diversity community in ice-free sectors, dominated by larger centric diatoms and Phaeocystis pouchetii adapted to high light/low nutrient conditions. Several phytoplankton species were flagged as indicators for the under-ice and marginal ice zone sectors, including ice-associated taxa such as the diatoms Melosira arctica and Pseudo-nitzschia seriata, but also subspecies representatives of the early-blooming alga Micromonas polaris and the cryptophyte Baffinella frigidus. The strong association of certain taxa with under-ice and marginal ice zone sectors, including Pterosperma sp., Chrysochromulina sp., Micromonas polaris, and B. frigidus, suggest that they might be indicators of diversity loss due to ongoing sea-ice changes in Baffin Bay. We report new intra-species variability of Micromonas polaris suggesting that seasonal specialists could wax and wane over the bloom and non-bloom periods, highlighting the need for detailed year-long studies and the importance of microdiversity when assessing the diversity and distribution of polar phytoplankton.

Analysis of genetic diversity and structure of endangered Dengchuan cattle population using a single-nucleotide polymorphism chip

This study aimed to evaluate the genetic diversity and structure within the Dengchuan cattle population and effectively protect and utilize their germplasm resources. Herein, the single-nucleotide polymorphisms (SNPs) of 100 Dengchuan cattle (46 bulls and 54 cows) were determined using the GGP Bovine 100K SNP Beadchip. The results showed that among the Dengchuan cattle, a total of 101,220 SNPs were detected, and there were 83,534 SNPs that passed quality control, of which 85.7% were polymorphic. The average genetic distance based on identity-by-state (IBS) within the conservation population of Dengchuan cattle was 0.26 ± 0.02. A total of 3,999 genome-length runs of homozygosity (ROHs) were detected in the Dengchuan cattle, with ROH lengths primarily concentrated in the range of 1–5 Mb, accounting for 87.02% of the total. The average inbreeding coefficient based on ROHs was 4.6%, within the conservation population of Dengchuan cattle, whereas it was 4.9% for bulls, and the Wright inbreeding coefficient (FIS) value was 2.4%, demonstrating a low level of inbreeding within the Dengchuan cattle population. Based on neighbor-joining tree analysis, the Dengchuan cattle could be divided into 16 families. In summary, the conservation population of Dengchuan cattle displays relatively abundant diversity and a moderate genetic relationship. Inbreeding was observed among a few individuals, but the overall inbreeding level of the population remained low. It is important to maintain this low level of inbreeding when introducing purebred bloodlines to expand the core group. This approach will ensure the long-term conservation of Dengchuan cattle germplasm resources and prevent loss of genetic diversity.

Genomics-informed captive breeding can reduce inbreeding depression and the genetic load in zoo populations.

Zoo populations of threatened species are a valuable resource for the restoration of wild populations. However, their small effective population size poses a risk to long-term viability, especially in species with high genetic load. Recent bioinformatic developments can identify harmful genetic variants in genome data. Here, we advance this approach, analysing the genetic load in the threatened pink pigeon (Nesoenas mayeri). We lifted the mutation-impact scores that had been calculated for the chicken (Gallus gallus) to estimate the genetic load in six pink pigeons. Additionally, we perform in silico crossings to predict the genetic load and realized load of potential offspring. We thus identify the optimal mate pairs that are theoretically expected to produce offspring with the least inbreeding depression. We use computer simulations to show how genomics-informed conservation can reduce the genetic load whilst reducing the loss of genome-wide diversity. Genomics-informed management is likely to become instrumental in maintaining the long-term viability of zoo populations.

Does fortune follow function? Exploring how consumer preferences drive the functional trait composition of the global songbird trade

Abstract Defaunation and extinction undermine the resilience and functioning of ecological communities and ecosystems. Relative to other disturbances, overexploitation for the global wildlife trade presents a unique case of trait‐based selection, as demand for specific individuals is often tied to unique morphological or aesthetic traits desired by consumers (‘market traits’). Because evolutionary history leads to species that share both market and functional traits, we posit that non‐random patterns of exploitation will result in non‐random loss of functional diversity. We applied a trait‐based framework to the global songbird trade for 4616 species, 148 of which are plausibly threatened by the trade. We quantified select market traits, such as unique coloration and song quality, and ecological traits related to body size, diet, and foraging strategy to assess whether the trade disproportionately threatens particular functional groups. We additionally looked for patterns of association between market traits and functional traits to assess whether selection on certain market traits could drive selection on associated functional traits. We found that overexploited birds are a distinct functional subset of the global songbird pool, with the trade disproportionately threatening large bodied, frugivorous, and seed eating birds. Across all songbirds, there were multiple non‐random associations between market traits and functional traits, with the strongest associations observed among trade‐threatened birds; this was consistent with our theory that consumer‐driven selection on market traits could theoretically result in selection on functional traits. However, there was mixed evidence for this hypothesis at a global scale, suggesting that disproportionate threat to functional diversity may be more likely in regions where there is heavy demand for associated market traits. Policy implications. Our results highlight the need for increased focus on the mechanistic drivers of trait‐based selection on the consumer side of wildlife trade, and how patterns of overexploitation can systematically affect ecological communities and ecosystem services. Read the free Plain Language Summary for this article on the Journal blog.

Genomic analysis of inbreeding level, kinship and breed relationships in Creole cattle from South America.

The conservation of animal genetic resources refers to measures taken to prevent the loss of genetic diversity in livestock populations, including the protection of breeds from extinction. Creole cattle populations have suffered a drastic reduction in recent decades owing to absorbent crosses or replacement with commercial breeds of European or Indian origin. Genetic characterization can serve as a source of information for conservation strategies to maintain genetic variation. The objective of this work was to evaluate the levels of inbreeding and kinship through the use of genomic information. A total of 903 DNAs from 13 cattle populations from Argentina, Bolivia and Uruguay were genotyped using an SNP panel of 48 K. Also, a dataset of 76 K SNPs from Peruvian Creole was included. Two inbreeding indices (FROH and Fhat2) and kinship relationships were calculated. In addition, effective population size (Ne), linkage disequilibrium, population composition and phylogenetic relationships were estimated. In Creole cattle, FROH ranged from 0.14 to 0.03, and Fhat2 was close to zero. The inferred Ne trends exhibited a decline toward the present for all populations, whereas Creole cattle presented a lower magnitude of Ne than foreign breeds. Cluster analysis clearly differentiated the taurine and Zebu components (K2) and showed that Bolivian Creole cattle presented Zebu gene introgression. Despite the population reduction, Creole populations did not present extreme values of consanguinity and kinship and maintain high levels of genetic diversity. The information obtained in this work may be useful for planning conservation programmes for these valuable local animal genetic resources.

Vulnerability of tidal morphologies to relative sea-level rise in the Venice Lagoon

The rise in sea level and land subsidence are seriously threatening the diversity of tidal morphologies that have made the Venice Lagoon such a distinctive landscape. Here, we assess the vulnerability of tidal morphologies to relative sea-level rise based on a new conceptual framework that accounts for both above- and below-sea-level zones, sedimentary architecture, and surface morphology. Around 80 % of the lagoon area will face moderate to severe vulnerability by 2050, doubling compared to the 1990s. While the subtidal zone may be relatively less threatened compared to past conditions, the drastic decline in intertidal morphologies is alarming. This contributes to the flattening and deepening of the lagoon topography and thus to the loss of lagoon landscape diversity, likely leading to a decrease in the ecosystem services the tidal morphologies provide. The interconnection of intertidal and subtidal morphologies is crucial for maintaining the overall health and functionality of the lagoon's ecosystem. Any disruption to one aspect can have ripple effects throughout the entire system.

Avian functional diversity retained in a tropical rainforest fragment after more than 120 years of turnover

AbstractDeforestation is linked to the increasing prevalence of small forest fragments worldwide and an associated loss in functional diversity. However, our long-term understanding on how biodiversity and functional roles respond in such isolated fragments is limited, especially in Southeast Asia. We compared the bird community in a small primary rainforest fragment in the Singapore Botanic Gardens, a UNESCO World Heritage Site, using historical records in 1898 and contemporary surveys conducted in 1998 and 2018–2021. Species composition was expectedly dissimilar between the 1898 and contemporary bird communities (50%), driven mostly by turnover (45.5%) rather than nestedness (4.5%). Despite the changes in community composition and species extirpations, both species richness and functional diversity were retained. Our results suggest that small forest fragments can form novel bird communities that are functionally similar to previous communities that inhabited the fragment, leading to the retention of functional diversity. Such functional redundancy may be encouraged through habitat restoration initiatives adjacent to fragmented forests.

Impact of pre-copulatory sexual cannibalism on genetic diversity and efficacy of selection.

Factors that increase reproductive variance among individuals act to reduce effective population size (Ne), which accelerates the loss of genetic diversity and decreases the efficacy of purifying selection. These factors include sexual cannibalism, offspring investment and mating system. Pre-copulatory sexual cannibalism, where the female consumes the male prior to mating, exacerbates this effect. We performed comparative transcriptomics in two spider species, the cannibalistic Trechaleoides biocellata and the non-cannibalistic T. keyserlingi, to generate genomic evidence to support these predictions. First, we estimated heterozygosity and found that genetic diversity is relatively lower in the cannibalistic species. Second, we calculated dN/dS ratios as a measure of purifying selection; a higher dN/dS ratio indicated relaxed purifying selection in the cannibalistic species. These results are consistent with the hypothesis that sexual cannibalism impacts operational sex ratio and demographic processes, which interact with evolutionary forces to shape the genetic structure of populations. However, other factors such as the mating system and life-history traits contribute to shaping Ne. Comparative analyses across multiple contrasting species pairs would be required to disentangle these effects. Our study highlights that extreme behaviours such as pre-copulatory cannibalism may have profound eco-evolutionary effects.

Driving mechanisms of soil bacterial α and β diversity under long-term nitrogen addition: Subtractive heterogenization based on the environment selection

Soil bacterial α and β diversity patterns under nitrogen (N) addition have been intensively examined, but γ diversity patterns remain largely unknown, especially, the mechanisms that concurrently control changes in α, β and γ diversity remain elusive. Therefore, we formulated a conceptual framework that simultaneously considers candidate drivers including ubiquitous species, rare species, and community assembly processes to elucidate the driving mechanisms of α, β and γ diversity under N addition. The conceptual framework was tested by compiling the sequence data of seven studies published from January 1997 to May 2022 and following the same analysis as our own two long-term multilevel N addition experiments. We demonstrate that subtractive heterogenization based on environment selection simultaneously predicts the changes in α, β and γ diversity under long-term N addition. That is, long-term N addition led to the decline of ubiquitous species (subtractive processes) through low soil pH, and promoted the strength of heterogeneous selection (heterogeneous processes) via enhancing environmental heterogeneity, subsequently causing lower α diversity and γ diversity but higher β diversity. These results mean that N addition may lead to a significant loss of soil bacterial diversity around the world. Together, these findings offer a way to simultaneously predict soil bacterial α, β and γ diversity responses to the ongoing atmospheric nitrogen deposition.

A Two-Faced Gut Microbiome: Butyrogenic and Proinflammatory Bacteria Predominate in the Intestinal Milieu of People Living with HIV from Western Mexico.

HIV infection results in marked alterations in the gut microbiota (GM), such as the loss of microbial diversity and different taxonomic and metabolic profiles. Despite antiretroviral therapy (ART) partially ablating gastrointestinal alterations, the taxonomic profile after successful new ART has shown wide variations. Our objective was to determine the GM composition and functions in people living with HIV (PLWHIV) under ART in comparison to seronegative controls (SC). Fecal samples from 21 subjects (treated with integrase strand-transfer inhibitors, INSTIs) and 18 SC were included. We employed 16S rRNA amplicon sequencing, coupled with PICRUSt2 and fecal short-chain fatty acid (SCFA) quantification by gas chromatography. The INSTI group showed a decreased α-diversity (p < 0.001) compared to the SC group, at the expense of increased amounts of Pseudomonadota (Proteobacteria), Segatella copri, Lactobacillus, and Gram-negative bacteria. Concurrently, we observed an enrichment in Megasphaera and Butyricicoccus, both SCFA-producing bacteria, and significant elevations in fecal butyrate in this group (p < 0.001). Interestingly, gut dysbiosis in PLWHIV was characterized by a proinflammatory environment orchestrated by Pseudomonadota and elevated levels of butyrate associated with bacterial metabolic pathways, as well as the evident presence of butyrogenic bacteria. The role of this unique GM in PLWHIV should be evaluated, as well as the use of butyrate-based supplements and ART regimens that contain succinate, such as tenofovir disoproxil succinate. This mixed profile is described for the first time in PLWHIV from Mexico.

Analysis of the Genetic Relationship and Inbreeding Coefficient of the Hetian Qing Donkey through a Simplified Genome Sequencing Technology

Analysis of the Genetic Relationship and Inbreeding Coefficient of the Hetian Qing Donkey through a Simplified Genome Sequencing Technology

Landscape simplification leads to loss of plant–pollinator interaction diversity and flower visitation frequency despite buffering by abundant generalist pollinators

AbstractAimGlobal change, especially landscape simplification, is a main driver of species loss that can alter ecological interaction networks, with potentially severe consequences to ecosystem functions. Therefore, understanding how landscape simplification affects the rate of loss of plant–pollinator interaction diversity (i.e., number of unique interactions) compared to species diversity alone, and the role of persisting abundant pollinators, is key to assess the consequences of landscape simplification on network stability and pollination services.LocationFrance, Germany, and Switzerland.MethodsWe analysed 24 landscape‐scale plant–pollinator networks from standardised transect walks along landscape simplification gradients in three countries. We compared the rates of species and interaction diversity loss along the landscape simplification gradient and then stepwise excluded the top 1%–20% most abundant pollinators from the data set to evaluate their effect on interaction diversity, network robustness to secondary loss of species, and flower visitation frequencies in simplified landscapes.ResultsInteraction diversity was not more vulnerable than species diversity to landscape simplification, with pollinator and interaction diversity showing similar rates of erosion with landscape simplification. We found that 20% of both species and interactions are lost with an increase of arable crop cover from 30% to 80% in a landscape. The decrease in interaction diversity was partially buffered by persistent abundant generalist pollinators in simplified landscapes, which were nested subsets of pollinator communities in complex landscapes, while plants showed a high turnover in interactions across landscapes. The top 5% most abundant pollinator species also contributed to network robustness against secondary species loss but could not prevent flowers from a loss of visits in simplified landscapes.Main ConclusionsAlthough persistent abundant pollinators buffered the decrease in interaction diversity in simplified landscapes and stabilised network robustness, flower visitation frequency was reduced, emphasising potentially severe consequences of further ongoing land‐use change for pollination services.

Forest fuel extraction does not affect macrolichens on deadwood substrates, but only if coarse woody debris is not collected

AbstractThe increasing use of forest fuels poses risks to biodiversity. Lichens that grow on deadwood may be affected as fuel extraction removes their substrates. We surveyed deadwood and macrolichens on deadwood in two types of clearcuts: sites in which forest fuels, stumps and slash, had been extracted, and standard clearcut sites, i.e. control sites with no fuel extraction. Extraction sites had 52% lower deadwood volume (44.3 m³/ha vs. 21.4 m³/ha) and 36% less deadwood surface area. However, the negative impact of fuel extraction on macrolichen species richness was low: 21.4 and 16.9 species on average were found in control and extraction sites, respectively. We found a clear positive relationship between macrolichen species richness and the surface area of logs, which are usually not targeted by forest fuel extraction. Species composition varied more among extraction sites than control sites and differed between all the studied deadwood types. Species of Cladonia were associated with stumps, while species in the family Parmeliaceae were associated with logs. Slash was of negligible importance to macrolichens. Stumps may hold value, particularly if large-sized deadwood is otherwise not available. Thus, we conclude that the extraction of slash poses no threat to macrolichen diversity, whereas extensive extraction of stumps can cause losses in lichen diversity. The loss of coarse woody debris during forest fuel extraction has negative effects on lichen diversity and should be avoided.

Subtitling Hong Kong Code-Mixing and Code-Switching

Translation has largely been considered a process involving only two languages, source and target. However, plurilingual audiovisual content has proliferated over the last few decades, reflecting, as a result, the world’s linguistic intermingling. Such a plurality complicates both theoretical categorizations and translation practices. Even though multilingualism in the media has received scholarly attention, more explorations are needed to ascertain the translation processes and methods adopted to handle linguistically diverse source texts in the streaming era. The present piece of research tentatively explores the treatment given to Cantonese and English code-mixing and code-switching present in Hongkonese films and TV shows currently streamed on Netflix, the video-on-demand platform. This article probes a selection of such content and compares the original dialogues with official Chinese, English and Spanish subtitles. Preliminary results point towards a loss of linguistic diversity and nuance caused by subtitling processes. The differentiated roles that both languages originally play in creating comedic, stylistic, or emphatic effects are rarely retained, possibly affecting viewers’ reception and appreciation. This article argues that further attention should be paid to the translation and adaptation of code-mixing and code-switching present in Hongkonese creations, both by the industry and academia, if such a multilingual reality is to be portrayed successfully via subtitles.

Species diversity and extinction risk of vertebrate pollinators in India

AbstractAnimal pollinators underpin the functioning and persistence of ecosystems globally. However, the vital role of pollination is being progressively eroded by the worldwide decline of pollinator species caused by human-induced environmental degradation, resulting in rising costs to biodiversity, agriculture, and economy. Most studies quantifying pollinator diversity and declines have focused on insects, whereas vertebrate pollinators remain comparatively neglected. Here, we present the first comprehensive study quantifying the macroecological patterns of species richness and extinction risk of bird and mammal pollinators in India, a region of extremely high biodiversity and increasing anthropogenic pressure. Our results reveal that hotspots of mammal pollinator diversity are restricted to the south of the Western Ghats, whereas bird pollinator diversity hotspots are scattered throughout the country. Analyses of hotspots of threatened species (based on the IUCN Red List) show that only mammal pollinators are currently classified as threatened in India, whereas multiple hotspots of population declines were observed for birds, and primarily in the Southwest for mammal pollinators. Our analyses failed to identify a role for species traits as drivers of these patterns, whereas most pollinators appear to be threatened by agriculture, logging and hunting for food, and medicinal purposes. Pollinator endangerment has widescale ecological and economic implications such as reduced food production, plant extinction, loss of functional and genetic diversity, and economic damage. We suggest protection of vertebrate pollinators should be emphasised in active conservation agendas in India.

Levels of microbial diversity affect the stability and function of dark fermentation bioreactors

Climate change and pollution drive the need for fossil fuel alternatives. Dark fermentation offers promise through the use of microbial consortia to convert organic matter into hydrogen gas. Persisting challenges like instability and low yields may stem from reduced diversity of the anaerobic digestion communities that serve as inoculum and undergo aggressive pretreatments and culturing conditions. This study explores the impact of diversity loss on function, focusing on biogas production and stability. Two treatments, with and without aggressive pretreatment, were tested on 12 replicate bioreactors each, resulting in differing microbial diversity levels. Microbial communities were assessed via 16S amplicon sequencing, monitoring biogas production, volatile fatty acids, and testing invasion susceptibility. The two treatments exhibited divergent assembly and functional trajectories, although replicates within each treatment ultimately converged into similar compositions and stable levels of biogas production. Heat-treated bioreactors showed a 91.5% biogas increase but exhibited higher invasion susceptibility compared to non-treated. Non-treated bioreactors showed unique species associations with biogas production (e.g. Ethanoligenens harbinense and Enterococcus olivae), distinct from the commonly studied Clostridium group. These findings provide insights into the effects of diversity loss on stability, elucidating differences across taxonomic and functional stability as well as invasion susceptibility. Moreover, the identification of novel bacterial groups associated with hydrogen production suggests promising directions for future research to enhance microbial consortia control and design in dark fermentation.

Genome-wide single nucleotide polymorphisms reveal the genetic diversity and population structure of Creole goats from northern Peru

Goat farming constitutes a significant source of income for farmers in northern Peru. There is currently an absence of information about the genetics of Peruvian Creole goats that would enable us to understand their origins and genetic spread. The objective of this study was to estimate the genetic diversity of Creole goats from northern Peru using SNP markers. This study involved the collection of 192 male Creole goats from three key goat production geographical departments in northern Peru. These goat samples were genotyped using the GGPGoat70k SNP panel. To explore the genetic influence of other breeds on Peruvian Creole goats, our dataset was combined with previously published SNP genotypes. External data set includes multiple breeds genotypes sampled from Argentina, Brazil, Spain, and Alpine breed from Italy, France, and Switzerland. After quality control 52,832 autosomal SNPs were used to assess genetic diversity in the Peruvian goats. For the population structure analysis of the merged data 20,513 common SNPs were used. Estimations for expected heterozygosity (He), observed heterozygosity (Ho), and inbreeding coefficient (FIS) were computed for the Peruvian groups. AMOVA, principal component analysis and ADMIXTURE were conducted to evaluate the population structure in the two data sets, Peru and merged. The results revealed a considerable genetic diversity, with Ho values ranging from 0.40 to 0.41 for the Peruvian sampling groups, and inbreeding coefficient was notably low for Peruvian goat. The population structure analysis demonstrated a distinction (p < 0.05) from other breeds. These findings suggest a level of genetic differentiation of the Peruvian goat population among other breeds, although further research is needed considering samples from other Peruvian areas. We expect this study will contribute to define genetic management strategies to prevent the loss of genetic diversity in Peruvian goat populations and for upcoming advancements in this field.

Climate change impact assessments on the Andean genus Menonvillea (Brassicaceae) reveal uneven vulnerability among major phylogenetic and biogeographic groups

Climate change impact on species can be heterogeneous depending on their environments, exposure, and intrinsic characteristics. Likewise, global warming may have an uneven effect on lineages, depending on whether phylogenetic conservatism or divergence of ecological niches predominates during clade diversification, imposing a higher risk to species groups from certain regions, habitats and lineages. This study evaluates the impact of future climate change on Menonvillea, a genus with 24 species distributed along the Andes and contiguous regions of the Southern Cone. The impact on the main phylogenetic, ecological and biogeographic groups is evaluated, also analyzing the effect on its richness and phylogenetic diversity. Results show a strongly negative impact on most species of the genus. However, the greatest pressure seems to be recovered for high Andean species, mainly from the southern portion of the Southern Andes (between 34°S–53S°), and mostly included in Menonvillea sect. Cuneata. Richness appears to be more impacted in high Andean regions, and the loss of phylogenetic diversity is greater than expected at random. These results highlight the strong negative impact that climate change can induce on lineages distributed in the Andean-Patagonian region, and that show patterns of phylogenetic niche conservatism.